scedar
latest
  • Install
  • Tutorial
    • Read data
    • Exploratory Data Analysis
      • Check dimensions and data
      • Create an instance of scedar data structure
      • t-SNE
      • UMAP
    • Clustering
      • Visualize pairwise distance matrix
      • Visualize t-SNE
      • Identify cluster separating genes
    • K-nearest neighbors
      • Impute gene dropouts
      • Detect rare samples
  • API Reference Manual
    • scedar
      • scedar.cluster
        • scedar.cluster.mirac
        • scedar.cluster.community
        • scedar.cluster.community_mirac
      • scedar.eda
        • scedar.eda.mdl
        • scedar.eda.mtype
        • scedar.eda.plot
        • scedar.eda.sdm
        • scedar.eda.sfm
        • scedar.eda.slcs
        • scedar.eda.stats
      • scedar.knn
        • scedar.knn.detection
        • scedar.knn.imputation
      • scedar.utils
  • Changelog
    • [0.2.0] - Feb 11, 2020
      • Changed
      • Added
    • [0.1.7] - Jul 2, 2019
      • Changed
    • [0.1.6] - Jan 2, 2019
      • Added
      • Changed
scedar
  • Docs »
  • Overview: module code

All modules for which code is available

  • scedar.cluster.community
  • scedar.cluster.community_mirac
  • scedar.cluster.mirac
  • scedar.eda.mdl
  • scedar.eda.mtype
  • scedar.eda.plot
  • scedar.eda.sdm
  • scedar.eda.sfm
  • scedar.eda.slcs
  • scedar.eda.stats
  • scedar.knn.detection
  • scedar.knn.imputation
  • scedar.utils

© Copyright 2018, Scedar developers Revision 3979b6d5.

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