scedar
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Install
Tutorial
Read data
Exploratory Data Analysis
Check dimensions and data
Create an instance of scedar data structure
t-SNE
UMAP
Clustering
Visualize pairwise distance matrix
Visualize t-SNE
Identify cluster separating genes
K-nearest neighbors
Impute gene dropouts
Detect rare samples
API Reference Manual
scedar
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scedar.cluster.community_mirac
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scedar.eda.stats
scedar.knn
scedar.knn.detection
scedar.knn.imputation
scedar.utils
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[0.2.0] - Feb 11, 2020
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[0.1.7] - Jul 2, 2019
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[0.1.6] - Jan 2, 2019
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scedar.cluster
scedar.cluster.mirac
scedar.cluster.community
scedar.cluster.community_mirac
scedar.eda
scedar.eda.mdl
scedar.eda.mtype
scedar.eda.plot
scedar.eda.sdm
scedar.eda.sfm
scedar.eda.slcs
scedar.eda.stats
scedar.knn
scedar.knn.detection
scedar.knn.imputation
scedar.utils
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